patmatmotifs Search motif database with protein sequence sigcleave

Posted by Ellie on Sep 28, 2008 in Sequence Analysis | 0 comments

sigcleave Reports protein signal cleavage sites. compseq Count composition of dimertrimeretc words in sequence checktrans ORF property statistics. backtranseq Back translate protein sequence. EMBOSS garnier Predicts protein secondary structure helixturnhelix Report nucleic acid binding motifs. prettyplot Replacement for EGCGs prettyplot. pepwindowall Displays protein hydropathy of set of aligned sequences. epestfind Finds motifs as potential proteolytic cleavage sites. EMBOSS antigenic Finds antigenic sites in proteins. fuzztran Protein pattern search after translation.

iep Calculates the isoelectric point of protein. pepwheel Displays proteins as helical pepnet Shows protein sequences as helices. charge Protein charge plot. Also to provide text output from sequence alignments.. oddcomp Find protein sequence regions with biased composition patmatdb Search protein sequence database with motif.

compseq Count composition of dimertrimeretc words in sequence checktrans ORF property statistics. pepwindow Displays protein hydropathy. PROSE prose Search Prosite patterns in sequence. pscan Scans proteins using PRINTS database. prettyplot Replacement for EGCGs prettyplot. Enzyme kinetics EMBOSS findkm Calculates Km and Vmax for an enzyme reaction. backtranambig Back translate protein sequence to ambiguous codons.

Protein structure analysis DSSP dssp Discrimination of protein secondary structure helixturnhelix Report nucleic acid binding motifs. fuzzpro Protein pattern search.

EMBOSS antigenic Finds antigenic sites in proteins. pepwindow Displays protein hydropathy. Pattern searching PRATT pratt Patterns discovery in sets of unaligned protein sequences. TOPPRED toppred Topology prediction of membrane proteins. prettyplot Replacement for EGCGs prettyplot. PROSE prose Search Prosite patterns in sequence. backtranseq Back translate protein sequence to ambiguous codons. iep Calculates the isoelectric point of protein. pscan Scans proteins using PRINTS database. mwfilter Filter noisy molwts from mass spec output.

PSORT psort Predicts protein subcellular localization sites from their amino acid sequences. preg Regular expression search of protein sequence. backtranseq Back translate protein sequence to ambiguous codons. sigcleave Reports protein signal cleavage sites. compseq Count composition of dimertrimeretc words in sequence checktrans ORF property statistics. Pattern searching PRATT pratt Patterns discovery in sets of unaligned protein sequences. Protein properties SAPS saps Statistical Analysis of Protein Sequences. TOPPRED toppred Topology prediction of membrane proteins. tmap Displays membrane spanning regions. freak Base frequency table or plot hmoment Hydrophobic moment calculation. SIG sig Multiple Prosite motifs searching. patmatmotifs Search motif database with protein sequence.
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