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You will have Days after purchase to access the Full Text PDF Full Text HTML Access this document Buy this document Learn more about purchasing articles and standardsArticle Information An Efficient Parallel Implementation of the Hidden Markov Methods for Genomic SequenceSearch on Massively Parallel System Jiang, K. Thorsen, O. Peters, A. Smith, B. Sosa, You are not logged in. We report the performance of these nonoptimized versions as baselines. Pages15 Digital Object Identifier databases used for sequence comparison and sequence alignment are growing exponentially. This has popularized programs that carry out database searches.

You must log in to access Advanced or Author Search CrossRef Search AbstractPlus Records Full Text HTML Access this document Buy this document Learn more about purchasing articles and standards Learn more about subscription options or how to become an IEEE Member. An Efficient Parallel Implementation of the Hidden Markov Methods for Genomic SequenceSearch on Massively Parallel System Jiang, K. Thorsen, O. Peters, A. Smith, B. Sosa, IEEE Communications Society members If you subscribe to the IEEE Electronic Periodicals Package Plus, you must access your subscription at www. comsoc. org.

Pages15 Digital Object Identifier databases used for sequence comparison and sequence alignment are growing exponentially. We report the performance of these nonoptimized versions as baselines. This has popularized programs that carry out database searches. HMMER uses profile HMMs for sensitive database searching based on statistical descriptions of sequence familys consensus Durbin et al., 1998, Two of the nine programs were further parallelized to take advantage of the large number of processors, namely, hmmsearch and hmmpfam. You are not logged in.

For our study, we start by porting the parallel virtual machine PVM versions of these two programs currently available as part of the HMMER suite of programs.

This has popularized programs that carry out database searches. We report the performance of these nonoptimized versions as baselines. Current implementations of sequence alignment methods based on hidden Markov models HMM have proven to be computationally intensive and, hence, amenable to architectures with multiple processors. Our work also includes the introduction of an alternate sequence file indexing, multiplemaster configuration, dynamic data collection and, finally, load balancing via the indexed sequence files.

The papers format consists of an introduction followed

Please complete the online Technical Support Form if you need assistance. The papers format consists of an introduction followed by two sections providing scientific as well as financial, business, and entrepreneurial perspective with regard to nanobioscience and bioinformatics, respectively, in the United States and Canada. You must log in to access Advanced or Author Search CrossRef Search AbstractPlus Records Full Text HTML Access this document Buy this document Learn more about purchasing articles and standards Learn more about IEEE Subscriptions HelpContact UsPrivacy & SecurityIEEE.

These sections are then followed by thumbnail sketches of the broad range of North American universitylevel research in nanobioscience and bioinformatics. View citation and abstract. The papers format consists of an introduction followed by two sections providing scientific as well as financial, business, and entrepreneurial perspective with regard to nanobioscience and bioinformatics, respectively, in the United States and Canada. Already Purchased This Article?

NanoBioscience, IEEE Transactions on Volume 3, Issue 1, Pages74 Digital Object Identifier paper provides an overview of nanobioscience and bioinformatics initiatives in North America. These sections are then followed by thumbnail sketches of the broad range of North American universitylevel research in nanobioscience and bioinformatics. View citation and abstract IEEE Members Log in by entering your IEEE Web Account Username and Password. IEEE Communications Society members If you subscribe to the IEEE Electronic Periodicals Package Plus, you must access your subscription at www. comsoc. org.

Please complete the online Technical Support Form if you need to

NanoBioscience, IEEE Transactions on Volume 3, Issue 1, Pages74 Digital Object Identifier paper provides an overview of nanobioscience and bioinformatics initiatives in North America. These sections are then followed by thumbnail sketches of the broad range of North American universitylevel research in nanobioscience and bioinformatics. View citation and abstract IEEE Members Log in by entering your IEEE Web Account Username and Password.

Users at Subscribing Institutions Check with your librarian, information professional, or system manager to determine if you need assistance. You will have Days after purchase to access the document. The papers format consists of an introduction followed by two sections providing scientific as well as financial, business, and entrepreneurial perspective with regard to nanobioscience and bioinformatics, respectively, in the United States and Canada. Home. Login . Logout . Access Information . Alerts . Purchase History . Cart . Sitemap .